• Liu Q, Yang D, Zhang J, Wei Z, Wu G, Chen M. Analyzing the Spatiotemporal Interaction and Propagation of ATN Biomarkers in Alzheimer’s Disease Using Longitudinal Neuroimaging Data. IEEE International Symposium on Biomedical Imaging, 2021.
  • Zhang J, Yang D, He W, Wu G, Chen M. A Network-Guided Reaction-Diffusion Model of AT[N] Biomarkers in Alzheimer’s Disease. The 20th IEEE International Conference on BioInformatics and BioEngineering, 2020.
  • Chen M, Ahmadian M, Watson LT, Cao Y. Finding acceptable parameter regions of stochastic Hill functions for multisite phosphorylation mechanism. J Chem Phys. 2020;152(12):124108. doi:10.1063/1.5143004
  • Chen M, Cao Y. Analysis and remedy of negativity problem in hybrid stochastic simulation algorithm and its application. BMC Bioinformatics. 2019, 20:315. PMCID: PMC6584509.
  • Chen M, Wang S, Cao Y. Accuracy Analysis of Hybrid Stochastic Simulation Algorithm on Linear Chain Reaction Systems. Bull Math Biol. 2019, 81(8):3024-3052. doi:10.1007/s11538-018-0461-z
  • Chen M, Amos BD, Watson LT, Tyson JJ, Cao Y, Shaffer CA, Trosset MW, Oguz C, Kakoti G. Quasi-Newton stochastic optimization algorithm for parameter estimation of a stochastic model of the budding yeast cell cycle. IEEE/ACM Trans Comput Biol Bioinform. 2019, 16(1):301-311. doi:10.1109/TCBB.2017.2773083
  • Chen M, Cao Y, Watson LT. Parameter estimation of stochastic models based on limited data. ACM SIGBioinformatics Record. 2018, 7(3):1-3.
  • Li F, Chen M, Erban R, Cao Y. Reaction time for trimolecular reactions in compartment-based reaction-diffusion models. J Chem Phys. 2018, 148(20):204108.
  • Chen M, Li F, Wang S, Cao Y. Stochastic modeling and simulation of reaction-diffusion system with Hill function dynamics. BMC Syst Biol. 2017, 11:21. PMCID: PMC5374650. doi: 10.1186/s12918-017-0401-9
  • Wang S, Ahmadian M, Chen M, Tyson J, Cao Y. A hybrid stochastic model of budding yeast cell cycle control Mechanism. Proc. 7th ACM Int. Conf. on Bioinformatics, Computational Biology, and Health Informatics, 2016, 261-270. doi: 10.1145/2975167.2975194
  • Li F, Subramanian K, Chen M, Tyson JJ, Cao Y. A stochastic spatiotemporal model of a response-regulator network in the Caulobacter crescentus cell cycle. Phys Biol. 2016, 13(3):035007.
  • Chen M, Li F, Subramanian K, Tyson J, Cao Y. Two-dimensional model of bipolar PopZ polymerization in Caulobacter crescentus. Proc. 6th ACM Int. Conf. on Bioinformatics, Computational Biology, and Health Informatics, 2015, 37-46. doi: 10.1145/2808719.2808723