• Zhang J, Yang D, He W, Wu G, Chen M. A Network-Guided Reaction-Diffusion Model of AT[N] Biomarkers in Alzheimer’s Disease. The 20th IEEE International Conference on BioInformatics and BioEngineering, 2020 (Aceepted).
  • Chen M, Ahmadian M, Watson LT, Cao Y. Finding acceptable parameter regions of stochastic Hill functions for multisite phosphorylation mechanism. J Chem Phys. 2020;152(12):124108. doi:10.1063/1.5143004
  • Chen M, Cao Y. Analysis and remedy of negativity problem in hybrid stochastic simulation algorithm and its application. BMC Bioinformatics. 2019, 20:315. PMCID: PMC6584509.
  • Chen M, Wang S, Cao Y. Accuracy Analysis of Hybrid Stochastic Simulation Algorithm on Linear Chain Reaction Systems. Bull Math Biol. 2019, 81(8):3024-3052. doi:10.1007/s11538-018-0461-z
  • Chen M, Amos BD, Watson LT, Tyson JJ, Cao Y, Shaffer CA, Trosset MW, Oguz C, Kakoti G. Quasi-Newton stochastic optimization algorithm for parameter estimation of a stochastic model of the budding yeast cell cycle. IEEE/ACM Trans Comput Biol Bioinform. 2019, 16(1):301-311. doi:10.1109/TCBB.2017.2773083
  • Chen M, Cao Y, Watson LT. Parameter estimation of stochastic models based on limited data. ACM SIGBioinformatics Record. 2018, 7(3):1-3.
  • Li F, Chen M, Erban R, Cao Y. Reaction time for trimolecular reactions in compartment-based reaction-diffusion models. J Chem Phys. 2018, 148(20):204108.
  • Chen M, Li F, Wang S, Cao Y. Stochastic modeling and simulation of reaction-diffusion system with Hill function dynamics. BMC Syst Biol. 2017, 11:21. PMCID: PMC5374650. doi: 10.1186/s12918-017-0401-9
  • Wang S, Ahmadian M, Chen M, Tyson J, Cao Y. A hybrid stochastic model of budding yeast cell cycle control Mechanism. Proc. 7th ACM Int. Conf. on Bioinformatics, Computational Biology, and Health Informatics, 2016, 261-270. doi: 10.1145/2975167.2975194
  • Li F, Subramanian K, Chen M, Tyson JJ, Cao Y. A stochastic spatiotemporal model of a response-regulator network in the Caulobacter crescentus cell cycle. Phys Biol. 2016, 13(3):035007.
  • Chen M, Li F, Subramanian K, Tyson J, Cao Y. Two-dimensional model of bipolar PopZ polymerization in Caulobacter crescentus. Proc. 6th ACM Int. Conf. on Bioinformatics, Computational Biology, and Health Informatics, 2015, 37-46. doi: 10.1145/2808719.2808723